Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCX88755.1 | SCY09530.1 | SAMN02927903_00355 | SAMN02927903_00743 | RNA polymerase Rpb6. | Helicase conserved C-terminal domain-containing protein. | 0.974 |
SCX88755.1 | SCY37160.1 | SAMN02927903_00355 | SAMN02927903_01258 | RNA polymerase Rpb6. | Restriction endonuclease. | 0.969 |
SCX88755.1 | SCY70601.1 | SAMN02927903_00355 | SAMN02927903_02077 | RNA polymerase Rpb6. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.999 |
SCX88755.1 | SCY97500.1 | SAMN02927903_00355 | SAMN02927903_03201 | RNA polymerase Rpb6. | PLD-like domain-containing protein. | 0.998 |
SCX88755.1 | nusA | SAMN02927903_00355 | SAMN02927903_02239 | RNA polymerase Rpb6. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.974 |
SCX88755.1 | rplF | SAMN02927903_00355 | SAMN02927903_01230 | RNA polymerase Rpb6. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.983 |
SCX88755.1 | rpoA | SAMN02927903_00355 | SAMN02927903_01239 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SCX88755.1 | rpoB | SAMN02927903_00355 | SAMN02927903_02481 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SCX88755.1 | rpoC | SAMN02927903_00355 | SAMN02927903_02480 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
SCX88755.1 | rpsB | SAMN02927903_00355 | SAMN02927903_02256 | RNA polymerase Rpb6. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.969 |
SCY09530.1 | SCX88755.1 | SAMN02927903_00743 | SAMN02927903_00355 | Helicase conserved C-terminal domain-containing protein. | RNA polymerase Rpb6. | 0.974 |
SCY09530.1 | SCY97500.1 | SAMN02927903_00743 | SAMN02927903_03201 | Helicase conserved C-terminal domain-containing protein. | PLD-like domain-containing protein. | 0.843 |
SCY09530.1 | rplF | SAMN02927903_00743 | SAMN02927903_01230 | Helicase conserved C-terminal domain-containing protein. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.648 |
SCY09530.1 | rpoA | SAMN02927903_00743 | SAMN02927903_01239 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.970 |
SCY09530.1 | rpoB | SAMN02927903_00743 | SAMN02927903_02481 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.969 |
SCY09530.1 | rpoC | SAMN02927903_00743 | SAMN02927903_02480 | Helicase conserved C-terminal domain-containing protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.852 |
SCY37160.1 | SCX88755.1 | SAMN02927903_01258 | SAMN02927903_00355 | Restriction endonuclease. | RNA polymerase Rpb6. | 0.969 |
SCY37160.1 | SCY97500.1 | SAMN02927903_01258 | SAMN02927903_03201 | Restriction endonuclease. | PLD-like domain-containing protein. | 0.848 |
SCY37160.1 | rplF | SAMN02927903_01258 | SAMN02927903_01230 | Restriction endonuclease. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.581 |
SCY37160.1 | rpoA | SAMN02927903_01258 | SAMN02927903_01239 | Restriction endonuclease. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.970 |
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