Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCX80063.1 | SCY06329.1 | SAMN02927903_00108 | SAMN02927903_00653 | pRiA4b ORF-3-like protein. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.582 |
SCX80063.1 | SCY46068.1 | SAMN02927903_00108 | SAMN02927903_01431 | pRiA4b ORF-3-like protein. | Protein of unknown function. | 0.740 |
SCX80063.1 | SCY70069.1 | SAMN02927903_00108 | SAMN02927903_02052 | pRiA4b ORF-3-like protein. | Gliding motility associated protien GldN. | 0.747 |
SCX80063.1 | SCY82896.1 | SAMN02927903_00108 | SAMN02927903_02520 | pRiA4b ORF-3-like protein. | Flagellum-specific peptidoglycan hydrolase FlgJ. | 0.567 |
SCX80063.1 | SCY92405.1 | SAMN02927903_00108 | SAMN02927903_02925 | pRiA4b ORF-3-like protein. | Protein of unknown function. | 0.769 |
SCY03039.1 | SCY06329.1 | SAMN02927903_00571 | SAMN02927903_00653 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.705 |
SCY03039.1 | rnpA | SAMN02927903_00571 | SAMN02927903_02656 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.943 |
SCY06329.1 | SCX80063.1 | SAMN02927903_00653 | SAMN02927903_00108 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | pRiA4b ORF-3-like protein. | 0.582 |
SCY06329.1 | SCY03039.1 | SAMN02927903_00653 | SAMN02927903_00571 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.705 |
SCY06329.1 | SCY06367.1 | SAMN02927903_00653 | SAMN02927903_00654 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Protein of unknown function. | 0.865 |
SCY06329.1 | SCY46068.1 | SAMN02927903_00653 | SAMN02927903_01431 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Protein of unknown function. | 0.549 |
SCY06329.1 | SCY70069.1 | SAMN02927903_00653 | SAMN02927903_02052 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Gliding motility associated protien GldN. | 0.513 |
SCY06329.1 | SCY82896.1 | SAMN02927903_00653 | SAMN02927903_02520 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Flagellum-specific peptidoglycan hydrolase FlgJ. | 0.452 |
SCY06329.1 | SCY92405.1 | SAMN02927903_00653 | SAMN02927903_02925 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Protein of unknown function. | 0.669 |
SCY06329.1 | coaD | SAMN02927903_00653 | SAMN02927903_00596 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.844 |
SCY06329.1 | rlmH | SAMN02927903_00653 | SAMN02927903_00325 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.466 |
SCY06329.1 | rnpA | SAMN02927903_00653 | SAMN02927903_02656 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.570 |
SCY06367.1 | SCY06329.1 | SAMN02927903_00654 | SAMN02927903_00653 | Protein of unknown function. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.865 |
SCY46068.1 | SCX80063.1 | SAMN02927903_01431 | SAMN02927903_00108 | Protein of unknown function. | pRiA4b ORF-3-like protein. | 0.740 |
SCY46068.1 | SCY06329.1 | SAMN02927903_01431 | SAMN02927903_00653 | Protein of unknown function. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.549 |
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