STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY27366.1Acyltransferase. (378 aa)    
Predicted Functional Partners:
SCY27410.1
L-asparaginase.
       0.805
SCY27443.1
glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.776
SCY27328.1
TatD DNase family protein.
  
    0.648
SCY04349.1
PAS domain S-box-containing protein.
 
 
 0.567
SCY27303.1
Aspartyl protease.
       0.454
SCY27487.1
Hypothetical protein.
       0.420
SCY55704.1
Hypothetical protein.
  
 0.413
SCY57081.1
NTE family protein.
 
  
  0.400
Your Current Organism:
Flavobacterium caeni
NCBI taxonomy Id: 490189
Other names: CGMCC 1.7031, F. caeni, Flavobacteriaceae bacterium LM5, Flavobacterium caeni Liu et al. 2010 emend. Fujii et al. 2014, NBRC 104239, strain LM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.