STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY57537.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
SCY57509.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.828
SCY79490.1
Zinc transporter ZupT.
  
     0.676
SCY03832.1
Hypothetical protein.
  
     0.632
rnc
Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.631
SCY77281.1
Hypothetical protein.
  
     0.629
SCY49520.1
Hypothetical protein.
  
     0.594
SCY89662.1
Tetratricopeptide repeat-containing protein.
  
     0.590
SCY70167.1
Arginase family enzyme; Belongs to the arginase family.
  
     0.584
SCX83762.1
Protein of unknown function.
  
     0.550
SCY12395.1
Family of unknown function.
  
     0.548
Your Current Organism:
Flavobacterium caeni
NCBI taxonomy Id: 490189
Other names: CGMCC 1.7031, F. caeni, Flavobacteriaceae bacterium LM5, Flavobacterium caeni Liu et al. 2010 emend. Fujii et al. 2014, NBRC 104239, strain LM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.