STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY86452.1Cysteine desulfuration protein SufE. (142 aa)    
Predicted Functional Partners:
SCY86424.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.996
SCY91908.1
isopenicillin-N epimerase.
 
 0.896
SCX93306.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.870
SCY86470.1
FeS assembly SUF system protein.
 
     0.848
SCY86485.1
Protein of unknown function.
       0.828
SCY86438.1
Hypothetical protein.
       0.773
SCY86346.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
   0.770
SCY86323.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.742
SCY86369.1
Fe-S cluster assembly protein SufD.
 
 
 0.712
SCY86505.1
Protein of unknown function.
       0.600
Your Current Organism:
Flavobacterium caeni
NCBI taxonomy Id: 490189
Other names: CGMCC 1.7031, F. caeni, Flavobacteriaceae bacterium LM5, Flavobacterium caeni Liu et al. 2010 emend. Fujii et al. 2014, NBRC 104239, strain LM5
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