STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_8392Major facilitator superfamily transporter. (297 aa)    
Predicted Functional Partners:
TARUN_6817
Glycoside hydrolase family 18.
    
  0.488
TARUN_10170
Acyl-desaturase.
    
 0.480
TARUN_5611
Acyl-desaturase; Belongs to the cytochrome b5 family.
    
 0.480
TARUN_3647
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.480
TARUN_8507
Peroxisomal targeting signal receptor.
    
  0.451
TARUN_9552
Nitrate reductase.
     
 0.437
TARUN_8259
Udp-glucose 4-epimerase gal10.
    
  0.432
TARUN_7706
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.432
TARUN_4384
Dna-directed rna polymerases ii 24 kDa polypeptide.
    
  0.432
TARUN_2794
Dna-directed rna polymerase ii subunit rpb3.
    
  0.418
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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