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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_7613Emp24 gp25l p24 family. (211 aa)    
Predicted Functional Partners:
TARUN_8858
Endosomal p24b.
   
0.969
TARUN_7837
Endoplasmic reticulum vesicle 25.
   
 0.957
TARUN_5566
GOLD domain-containing protein.
   
 0.938
TARUN_5142
Zinc finger, ring fyve phd-type.
   
 0.935
TARUN_2919
30s ribosomal subunit s4.
   
 
 0.881
TARUN_6567
37s ribosomal s5; Belongs to the universal ribosomal protein uS5 family.
   
   0.879
TARUN_9780
Xylose isomerase.
   
 
 0.870
TARUN_7748
Ribosomal s16, mitochondrial.
   
   0.867
TARUN_2248
Ribosomal dap3.
   
 
 0.865
TARUN_3409
Ribosomal s15.
   
   0.861
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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