STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_7734Histone H2A; Belongs to the histone H2A family. (142 aa)    
Predicted Functional Partners:
TARUN_6750
Histone H2A; Belongs to the histone H2A family.
   
 0.994
TARUN_10414
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.990
TARUN_5698
Helicase swr1.
    
 0.987
TARUN_10324
Histone H3; Belongs to the histone H3 family.
   
 0.986
TARUN_3490
Histone acetyltransferase.
    
 0.985
TARUN_4652
Fact complex subunit spt16.
    
 
 0.984
TARUN_459
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
   
 0.984
TARUN_6749
Histone H2B; Belongs to the histone H2B family.
   
 0.983
TARUN_9642
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.981
TARUN_3032
Histone chaperone asf1.
   
 
 0.979
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.