STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_7617Uncharacterized protein. (297 aa)    
Predicted Functional Partners:
TARUN_7244
Ribosomal biogenesis gar2.
   
 
 0.986
TARUN_8939
Ribosome biogenesis ssf1.
   
 
 0.983
TARUN_2341
Brix domain-containing 2.
   
 
 0.978
TARUN_5884
Ribosome production factor 1.
   
 
 0.974
TARUN_5988
Nucleolar nop52 variant.
   
 
 0.970
TARUN_8506
Valyl-trna synthetase.
   
 
 0.965
TARUN_7587
Uncharacterized protein.
   
 
 0.960
TARUN_958
Protein MAK16; Belongs to the MAK16 family.
   
   0.955
TARUN_5616
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.954
TARUN_2947
RNA helicase.
   
 
 0.934
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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