STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_7624High-affinity nicotinic acid transporter. (495 aa)    
Predicted Functional Partners:
TARUN_3830
Chitin synthase.
   
  
 0.458
TARUN_9946
Amp-binding enzyme.
      
 0.439
TARUN_3558
60s ribosomal l12; Belongs to the universal ribosomal protein uL11 family.
      
 0.439
TARUN_2883
Endoglucanase eg-ii; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
      
 0.439
TARUN_2714
Exonuclease domain-containing protein.
      
 0.439
TARUN_2244
Enoyl-hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.437
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
      
 0.424
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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