STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_6698Metallopeptidase family m24. (492 aa)    
Predicted Functional Partners:
TARUN_6954
60s ribosomal l35.
  
 
 0.941
TARUN_6767
60s ribosomal l5.
  
 
 0.938
TARUN_2663
60s ribosomal l7.
  
 
 0.936
TARUN_6011
60s ribosomal l26.
  
   0.934
TARUN_10424
60s ribosomal l25.
  
 
 0.925
TARUN_4019
40s ribosomal s3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.889
TARUN_3167
Ribosomal s8; Belongs to the universal ribosomal protein uS8 family.
  
 
 0.886
TARUN_6235
Mitochondrial 40s ribosomal mrp2.
  
   0.875
TARUN_748
40s ribosomal s18; Belongs to the universal ribosomal protein uS13 family.
  
   0.874
TARUN_2720
40s ribosomal s15; Belongs to the universal ribosomal protein uS19 family.
  
   0.859
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.