STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_6240Cop9 signalosome complex subunit 2. (1046 aa)    
Predicted Functional Partners:
TARUN_8247
Cop9 signalosome complex subunit 4.
   
 0.999
TARUN_6825
Cop9 signalosome subunit 6.
   
 0.999
TARUN_5384
Cop9 signalosome subunit 1.
  
 0.999
TARUN_4167
Cop9 signalosome complex subunit 5.
   
 0.999
TARUN_4251
Cop9 signalosome complex subunit 3.
   
 0.999
TARUN_3355
Cop9 signalosome subunit 7.
    
 0.986
TARUN_10433
Ring-box 1.
    
 0.967
TARUN_8840
Ubiquitin ligase subunit; Belongs to the cullin family.
   
 0.947
TARUN_7182
Cullin 1; Belongs to the cullin family.
  
 0.896
TARUN_7548
Cullin 3; Belongs to the cullin family.
  
 0.890
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.