STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_3033Mrna 3-end-processing rna14. (996 aa)    
Predicted Functional Partners:
TARUN_6658
YTH domain-containing protein.
    
 0.998
TARUN_7239
Mrna cleavage factor complex component pcf11.
    
 0.997
TARUN_5359
Pre-mrna polyadenylation factor fip1.
   
 0.997
TARUN_4510
Cleavage stimulation factor subunit 2.
   
 0.997
TARUN_2725
Mrna cleavage and polyadenylation specificity factor complex subunit.
    
 0.994
TARUN_8611
CPSF_A domain-containing protein.
   
 0.982
TARUN_7063
Polyadenylation factor subunit 2.
   
 0.981
TARUN_9315
Endoribonuclease ysh1.
   
 0.969
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
    
 0.961
TARUN_275
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 
 0.961
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.