STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_1725Uncharacterized protein. (308 aa)    
Predicted Functional Partners:
TARUN_863
3-oxoacyl-acyl-carrier-synthase ii; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.561
TARUN_10170
Acyl-desaturase.
    
 0.557
TARUN_5611
Acyl-desaturase; Belongs to the cytochrome b5 family.
    
 0.557
TARUN_3647
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.557
TARUN_7556
Lactamase_B domain-containing protein.
   
  0.554
TARUN_7618
2Fe-2S ferredoxin-type domain-containing protein.
   
  0.554
TARUN_2657
Polyketide synthase.
    
  0.526
TARUN_6403
Short-chain dehydrogenase reductase.
  
     0.493
TARUN_9883
Short-chain dehydrogenase reductase sdr.
  
     0.480
TARUN_4875
Short-chain dehydrogenase.
  
     0.477
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.