STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARUN_128Cyclin-dependent kinase. (548 aa)    
Predicted Functional Partners:
TARUN_5434
Swi6.
    
 0.808
TARUN_8271
E3 ubiquitin-ligase rad18.
    
 0.793
TARUN_7462
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.790
TARUN_8966
Ubiquitin-conjugating enzyme variant mms2.
    
 0.784
TARUN_459
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.756
TARUN_6027
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.745
TARUN_6026
Proliferating cell nuclear antigen.
    
 0.745
TARUN_7025
Actin arp5; Belongs to the actin family.
    
 0.733
TARUN_5025
Ank-repeat mbp1.
    
 0.733
TARUN_6920
Actin 4; Belongs to the actin family.
   
 0.725
Your Current Organism:
Trichoderma arundinaceum
NCBI taxonomy Id: 490622
Other names: BPI 878405, CBS 119575, T. arundinaceum, Trichoderma arundinaceum Zafari, Graf. & Samuels, 2008, Trichoderma sp. GJS-2007a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.