STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB63074.1TadE-like protein. (146 aa)    
Predicted Functional Partners:
SFB63081.1
Type II secretion system (T2SS), protein F.
 
  
 0.963
SFB63088.1
Flp pilus assembly protein TadB.
 
  
 0.963
SFB63100.1
Hypothetical protein.
 
    0.936
SFB63096.1
Hypothetical protein.
 
     0.917
SFB63092.1
Pilus assembly protein, ATPase of CpaF family.
 
  
 0.910
SFB63066.1
TadE-like protein.
 
     0.905
SFB63063.1
Hypothetical protein.
 
     0.894
SFB63102.1
Hypothetical protein.
 
     0.878
SFB63106.1
Hypothetical protein.
 
     0.878
SFB63078.1
Hypothetical protein.
       0.828
Your Current Organism:
Amycolatopsis marina
NCBI taxonomy Id: 490629
Other names: Amycolatopsis marina Bian et al. 2009, CGMCC 4.3568, JCM 16121, NBRC 104263, strain Ms392A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.