SDI09576.1 protein (Lutimaribacter saemankumensis)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SDI09576.1

Carbon-monoxide dehydrogenase small subunit. (161 aa)

Predicted Functional Partners:

SDI09541.1

0.998

SDI36389.1

0.997

SDI55928.1

0.997

SDJ17884.1

0.996

SDI90607.1

0.994

SDJ17821.1

0.993

SDI09509.1

0.978

SDJ33449.1

0.966

SDI09637.1

0.923

SDI15305.1

0.914

Your Current Organism:

Lutimaribacter saemankumensis

NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDI09509.1	SDI09541.1	SAMN05421850_101628	SAMN05421850_101629	Carbon-monoxide dehydrogenase medium subunit.	Carbon-monoxide dehydrogenase large subunit.	0.983
SDI09509.1	SDI09576.1	SAMN05421850_101628	SAMN05421850_101630	Carbon-monoxide dehydrogenase medium subunit.	Carbon-monoxide dehydrogenase small subunit.	0.978
SDI09509.1	SDI09637.1	SAMN05421850_101628	SAMN05421850_101632	Carbon-monoxide dehydrogenase medium subunit.	Xanthine dehydrogenase accessory factor.	0.846
SDI09509.1	SDI15305.1	SAMN05421850_101628	SAMN05421850_101817	Carbon-monoxide dehydrogenase medium subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.694
SDI09509.1	SDI36389.1	SAMN05421850_101628	SAMN05421850_102332	Carbon-monoxide dehydrogenase medium subunit.	Carbon-monoxide dehydrogenase large subunit.	0.965
SDI09509.1	SDI55928.1	SAMN05421850_101628	SAMN05421850_103336	Carbon-monoxide dehydrogenase medium subunit.	Carbon-monoxide dehydrogenase large subunit.	0.966
SDI09509.1	SDJ17884.1	SAMN05421850_101628	SAMN05421850_109175	Carbon-monoxide dehydrogenase medium subunit.	CO or xanthine dehydrogenase, Mo-binding subunit.	0.888
SDI09541.1	SDI09509.1	SAMN05421850_101629	SAMN05421850_101628	Carbon-monoxide dehydrogenase large subunit.	Carbon-monoxide dehydrogenase medium subunit.	0.983
SDI09541.1	SDI09576.1	SAMN05421850_101629	SAMN05421850_101630	Carbon-monoxide dehydrogenase large subunit.	Carbon-monoxide dehydrogenase small subunit.	0.998
SDI09541.1	SDI09637.1	SAMN05421850_101629	SAMN05421850_101632	Carbon-monoxide dehydrogenase large subunit.	Xanthine dehydrogenase accessory factor.	0.856
SDI09541.1	SDI90607.1	SAMN05421850_101629	SAMN05421850_106186	Carbon-monoxide dehydrogenase large subunit.	CO or xanthine dehydrogenase, FAD-binding subunit.	0.928
SDI09541.1	SDJ17821.1	SAMN05421850_101629	SAMN05421850_109173	Carbon-monoxide dehydrogenase large subunit.	Carbon-monoxide dehydrogenase medium subunit.	0.917
SDI09541.1	SDJ33449.1	SAMN05421850_101629	SAMN05421850_11412	Carbon-monoxide dehydrogenase large subunit.	Xanthine dehydrogenase large subunit.	0.615
SDI09576.1	SDI09509.1	SAMN05421850_101630	SAMN05421850_101628	Carbon-monoxide dehydrogenase small subunit.	Carbon-monoxide dehydrogenase medium subunit.	0.978
SDI09576.1	SDI09541.1	SAMN05421850_101630	SAMN05421850_101629	Carbon-monoxide dehydrogenase small subunit.	Carbon-monoxide dehydrogenase large subunit.	0.998
SDI09576.1	SDI09637.1	SAMN05421850_101630	SAMN05421850_101632	Carbon-monoxide dehydrogenase small subunit.	Xanthine dehydrogenase accessory factor.	0.923
SDI09576.1	SDI15305.1	SAMN05421850_101630	SAMN05421850_101817	Carbon-monoxide dehydrogenase small subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.914
SDI09576.1	SDI36389.1	SAMN05421850_101630	SAMN05421850_102332	Carbon-monoxide dehydrogenase small subunit.	Carbon-monoxide dehydrogenase large subunit.	0.997
SDI09576.1	SDI55928.1	SAMN05421850_101630	SAMN05421850_103336	Carbon-monoxide dehydrogenase small subunit.	Carbon-monoxide dehydrogenase large subunit.	0.997
SDI09576.1	SDI90607.1	SAMN05421850_101630	SAMN05421850_106186	Carbon-monoxide dehydrogenase small subunit.	CO or xanthine dehydrogenase, FAD-binding subunit.	0.994

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

20

average node degree:

3.64

avg. local clustering coefficient:

0.841

expected number of edges:

15

PPI enrichment p-value:

0.103

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005975

Carbohydrate metabolic process

9 of 207

1.14

1.4

6.82e-07

GO:0005976

Polysaccharide metabolic process

5 of 57

1.45

1.36

0.00040

GO:0009225

Nucleotide-sugar metabolic process

3 of 18

1.73

1.08

0.0064

GO:0034637

Cellular carbohydrate biosynthetic process

4 of 46

1.44

1.06

0.0036

GO:0016051

Carbohydrate biosynthetic process

5 of 90

1.25

0.99

0.0023

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016779

Nucleotidyltransferase activity

5 of 51

1.5

1.45

0.00026

GO:0016868

Intramolecular transferase activity, phosphotransferases

2 of 5

2.11

0.73

0.0446

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2438

O-Antigen nucleotide sugar biosynthesis, and Alpha-D-phosphohexomutase, C-terminal

5 of 16

2.0

2.98

3.33e-07

CL:2431

Mixed, incl. Polysaccharide metabolic process, and O-Antigen nucleotide sugar biosynthesis

9 of 83

1.54

2.83

1.64e-10

CL:2439

O-Antigen nucleotide sugar biosynthesis

4 of 8

2.2

2.8

2.57e-06

CL:2434

Mixed, incl. O-Antigen nucleotide sugar biosynthesis, and Polysaccharide biosynthetic process

6 of 50

1.58

2.25

7.27e-07

CL:2565

Glucan metabolic process, and Disaccharide metabolic process

3 of 10

1.98

1.68

0.00043

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00541

O-Antigen nucleotide sugar biosynthesis

6 of 22

1.94

3.56

4.04e-09

map00520

Amino sugar and nucleotide sugar metabolism

8 of 52

1.69

3.36

8.78e-11

map00500

Starch and sucrose metabolism

6 of 33

1.76

2.98

2.30e-08

map00052

Galactose metabolism

3 of 22

1.64

1.32

0.0013

map00521

Streptomycin biosynthesis

2 of 17

1.57

0.77

0.0265

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0548

Nucleotidyltransferase

4 of 42

1.48

1.19

0.0017

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF12804

MobA-like NTP transferase domain

4 of 9

2.15

2.36

2.07e-05

PF02880

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

2 of 3

2.33

0.87

0.0251

PF02879

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

2 of 3

2.33

0.87

0.0251

PF02878

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I

2 of 3

2.33

0.87

0.0251

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR005835

Nucleotidyl transferase domain

4 of 6

2.33

2.65

7.64e-06

IPR029044

Nucleotide-diphospho-sugar transferases

6 of 37

1.71

2.38

1.45e-06

IPR036900

Alpha-D-phosphohexomutase, C-terminal domain superfamily

2 of 3

2.33

0.75

0.0419

IPR016066

Alpha-D-phosphohexomutase, conserved site

2 of 3

2.33

0.75

0.0419

IPR016055

Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III

2 of 3

2.33

0.75

0.0419

(more ...)

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