STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI10829.1TRAP transporter, DctM subunit. (466 aa)    
Predicted Functional Partners:
SDI10854.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
  0.994
SDI10886.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.989
SDI39530.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.577
SDH92994.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.552
SDJ31693.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.545
SDH93018.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.512
SDJ20871.1
C4-dicarboxylate transporter, DctQ subunit.
  
 0.505
SDJ18027.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.447
SDI36788.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.441
SDI35499.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.436
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.