STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI17573.1Apolipoprotein D and lipocalin family protein. (161 aa)    
Predicted Functional Partners:
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
     0.838
SDI17597.1
Uncharacterized conserved protein, DUF849 family.
       0.777
SDI17626.1
Predicted oxidoreductase.
  
  
 0.651
SDI09367.1
Hypothetical protein.
  
     0.532
SDI93008.1
Hypothetical protein.
 
    0.499
SDI50707.1
Endonuclease YncB, thermonuclease family.
  
     0.488
SDI99537.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
   
 
 0.458
SDI93226.1
Uncharacterized membrane protein YjgN, DUF898 family.
  
     0.456
SDI57490.1
Hint domain-containing protein.
  
     0.451
SDI17653.1
Hypothetical protein.
       0.437
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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