STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI34936.1DNA-binding transcriptional regulator, MarR family. (144 aa)    
Predicted Functional Partners:
SDI34966.1
Homogentisate 1,2-dioxygenase.
 
     0.837
SDI35093.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.735
SDI35168.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
 
    0.729
SDI35195.1
Protein of unknown function.
 
     0.689
SDI35026.1
Maleylacetoacetate isomerase/maleylpyruvate isomerase.
 
     0.686
SDI34904.1
EamA-like transporter family protein.
       0.636
SDI54098.1
4-hydroxyphenylpyruvate dioxygenase.
 
    0.613
SDI35059.1
Fumarylacetoacetase.
 
     0.517
SDI34996.1
Hypothetical protein.
       0.504
SDI57353.1
Cytochrome c.
   
 
  0.439
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.