STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI27838.1Exopolysaccharide biosynthesis protein YbjH. (727 aa)    
Predicted Functional Partners:
SDI27866.1
Group 4 capsule polysaccharide lipoprotein gfcB, YjbF.
 
     0.960
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.878
SDI61699.1
Exosortase D, VPLPA-CTERM-specific.
  
 
 
 0.777
SDJ06936.1
Hypothetical protein; Belongs to the cytochrome P450 family.
 
 
  0.763
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.708
SDI04495.1
Cytochrome P450.
   
  0.676
SDI35367.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
  0.676
SDI36758.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
  0.676
SDI68211.1
Hypothetical protein; Belongs to the cytochrome P450 family.
   
  0.676
SDI93278.1
Cytochrome P450.
   
  0.676
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.