STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI67389.1Transglycosylase SLT domain-containing protein. (267 aa)    
Predicted Functional Partners:
SDI67119.1
Pilus assembly protein CpaF.
 
    0.510
SDI75071.1
OmpA-OmpF porin, OOP family.
  
     0.450
SDI67180.1
Outer membrane protein OmpA.
 
     0.443
SDI89371.1
Outer membrane protein OmpA.
  
     0.443
SDI66996.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
    0.436
SDI08911.1
Flagellar motor switch protein FliG.
 
    0.433
lon
ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
  
     0.426
SDI03390.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.425
SDI77533.1
Flagellar hook protein FlgE.
  
    0.417
SDI66959.1
Prepilin peptidase CpaA.
 
     0.414
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.