STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI64061.1AsmA protein. (649 aa)    
Predicted Functional Partners:
SDI87779.1
Outer membrane protein OmpU.
  
     0.616
SDI64084.1
Hypothetical protein.
       0.538
SDI78485.1
Hypothetical protein.
  
    0.533
SDI52244.1
ABC transporter, phosphonate, substrate-binding protein.
  
     0.527
SDI78861.1
Hpt domain-containing protein.
 
     0.478
SDJ01609.1
Glutathione S-transferase.
  
     0.465
SDJ08817.1
Glycoside/pentoside/hexuronide:cation symporter, GPH family.
  
     0.465
SDI13635.1
Hypothetical protein.
  
     0.443
SDI76146.1
Hypothetical protein.
  
     0.420
SDI64030.1
Inorganic phosphate transporter, PiT family.
       0.407
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.