STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI90832.1Vanillate O-demethylase monooxygenase subunit. (355 aa)    
Predicted Functional Partners:
SDI36602.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
 
 0.985
SDI36686.1
Vanillate O-demethylase ferredoxin subunit.
 
 
 0.864
SDI90535.1
Reductive dehalogenase.
 
 
 0.795
SDI90858.1
Branched-chain amino acid transport system substrate-binding protein.
 
    0.782
SDI98051.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.692
SDI90797.1
DNA-binding transcriptional regulator, MarR family.
 
     0.667
SDI90888.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.654
SDI01164.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.605
SDI16683.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.605
SDI90924.1
Branched-chain amino acid transport system ATP-binding protein.
 
     0.596
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.