STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ10175.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (230 aa)    
Predicted Functional Partners:
SDI61471.1
Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
  
 0.932
SDI62056.1
Hypothetical protein.
 
 0.867
SDJ10262.1
Capsular exopolysaccharide family.
 
 
 0.856
SDJ32200.1
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase.
  
 
 0.792
SDI98533.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 0.735
SDJ10232.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
 
 
 0.728
SDJ10054.1
Polysaccharide export outer membrane protein.
 
 
 0.715
SDI61815.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.658
SDJ10145.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
   
 0.638
SDI61585.1
Hypothetical protein.
 
  
 0.634
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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