STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ10232.1Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. (520 aa)    
Predicted Functional Partners:
SDJ10262.1
Capsular exopolysaccharide family.
 
 
 0.978
SDJ10054.1
Polysaccharide export outer membrane protein.
 
 0.974
SDJ10209.1
Type II secretory pathway, component ExeA (predicted ATPase).
 
     0.953
SDI16274.1
Polysaccharide export outer membrane protein.
  
 0.885
SDI80143.1
Polysaccharide export outer membrane protein.
  
 0.885
SDJ10145.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.809
SDI61699.1
Exosortase D, VPLPA-CTERM-specific.
 
     0.801
SDI98533.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.796
SDI61585.1
Hypothetical protein.
 
  
 0.795
SDJ10175.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.728
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.