STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ07202.1Hypothetical protein. (678 aa)    
Predicted Functional Partners:
SDI76363.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.930
SDI57379.1
Cytochrome c.
   
 0.903
SDI93057.1
Electron transfer flavoprotein beta subunit.
  
 
 0.854
SDI00748.1
Dimethylamine/trimethylamine dehydrogenase.
 
0.842
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
 0.784
SDJ06553.1
Thioredoxin reductase (NADPH).
  
 
 0.782
SDI69496.1
Cytochrome C oxidase, cbb3-type, subunit III.
   
 0.760
SDI01141.1
Sarcosine oxidase subunit delta.
 
 0.752
SDI86249.1
2,4-dienoyl-CoA reductase (NADPH2).
 
0.748
SDI16711.1
Sarcosine oxidase subunit delta.
  
 0.707
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.