STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ17215.1DNA-binding transcriptional regulator, FadR family. (254 aa)    
Predicted Functional Partners:
SDJ08149.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.784
SDI35300.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.757
SDJ17244.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.727
SDI97470.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.697
SDJ01940.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.628
SDI90535.1
Reductive dehalogenase.
    
  0.597
SDJ17306.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
       0.586
SDI36686.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.579
SDI98051.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.579
SDJ17274.1
Acyl-CoA dehydrogenase.
       0.567
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.