STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ28828.1Phytoene desaturase. (56 aa)    
Predicted Functional Partners:
SDJ30188.1
Phytoene synthase.
 
 
 0.958
SDJ30125.1
Carotenoid 1,2-hydratase.
 
 
 0.926
SDJ30035.1
Demethylspheroidene O-methyltransferase.
 
 
 0.909
SDJ28945.1
Magnesium chelatase accessory protein.
 
    0.906
SDJ28916.1
Magnesium chelatase subunit D.
 
  
 0.857
SDJ29654.1
Geranylgeranyl reductase.
 
 
 0.856
SDJ29593.1
Chlorophyll synthase.
 
 
 0.846
bchN
Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.838
SDJ29510.1
3-vinyl bacteriochlorophyllide hydratase.
  
  
 0.834
SDJ29995.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
  
 0.826
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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