STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ30098.11-hydroxycarotenoid 3,4-desaturase. (501 aa)    
Predicted Functional Partners:
SDJ30125.1
Carotenoid 1,2-hydratase.
 
 
 0.988
SDJ30188.1
Phytoene synthase.
 
 0.966
SDJ30035.1
Demethylspheroidene O-methyltransferase.
 
 
 0.951
SDJ29995.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
  
 0.832
SDJ29910.1
Chlorophyllide a reductase subunit Z.
 
  
 0.804
SDJ30065.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 
 0.790
SDJ28862.1
Spheroidene monooxygenase.
 
 
 0.789
SDJ29510.1
3-vinyl bacteriochlorophyllide hydratase.
  
  
 0.775
SDJ29593.1
Chlorophyll synthase.
 
 
 0.775
SDH92336.1
Monoamine oxidase.
  
 
 0.773
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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