STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ33139.13-methylfumaryl-CoA hydratase. (282 aa)    
Predicted Functional Partners:
SDJ33176.1
2-methylfumaryl-CoA isomerase; Belongs to the CoA-transferase III family.
 
 
 0.929
sucC
succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
 
 
 
  0.610
SDI02571.1
2-methylcitrate dehydratase PrpD.
 
    0.588
SDI30820.1
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.576
SDI86608.1
beta-methylmalyl-CoA/L-malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.576
SDI89433.1
Catechol 2,3-dioxygenase.
  
    0.549
SDJ33202.1
GSCFA family protein.
       0.515
SDJ33244.1
Hypothetical protein.
       0.515
SDI14462.1
2-methylcitrate dehydratase PrpD.
  
    0.462
Your Current Organism:
Lutimaribacter saemankumensis
NCBI taxonomy Id: 490829
Other names: CCUG 55760, DSM 28010, KCTC 22244, L. saemankumensis, Lutimaribacter saemankumensis Yoon et al. 2009, strain SMK-117
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