STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DKAM_0806COG1533 DNA repair photolyase; pfam04055, Radical_SAM, Radical SAM superfamily. (381 aa)    
Predicted Functional Partners:
DKAM_0808
Phosphoserine phosphatase.
 
     0.596
DKAM_0223
Radical SAM domain protein.
  
     0.578
DKAM_0807
Hypothetical protein.
       0.532
DKAM_0327
PhoH family protein.
  
     0.519
DKAM_0380
DNA repair photolyase; Radical SAM domain protein.
  
     0.511
DKAM_0637
Metallophosphoesterase; COG1409 Predicted phosphohydrolases.
 
     0.461
DKAM_0639
Extracellular solute-binding protein, family 1; COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
     0.420
DKAM_0570
Pfam09335, SNARE_assoc, SNARE associated Golgi protein.
 
     0.419
Your Current Organism:
Desulfurococcus amylolyticus
NCBI taxonomy Id: 490899
Other names: D. amylolyticus 1221n, Desulfurococcus amylolyticus 1221n, Desulfurococcus kamchatkensis 1221n, Proteinoruptor kamchatkensis 1221n
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.