STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DKAM_0808Phosphoserine phosphatase. (215 aa)    
Predicted Functional Partners:
glyA
Glycine/serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
 
 0.952
DKAM_0858
ParB domain protein nuclease.
  
 
  0.902
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
    
  0.900
DKAM_0807
Hypothetical protein.
       0.824
DKAM_0918
Aspartate/serine transaminase; Pfam00266, Aminotran_5, Aminotransferase class-V; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
   
 0.757
DKAM_0806
COG1533 DNA repair photolyase; pfam04055, Radical_SAM, Radical SAM superfamily.
 
     0.600
DKAM_0378
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
     
 0.560
DKAM_0468
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
 
 0.525
DKAM_0479
COG0519 GMP synthase, PP-ATPase domain/subunit.
 
   
 0.499
DKAM_1332
COG0012 Predicted GTPase, probable translation factor.
 
  
 0.479
Your Current Organism:
Desulfurococcus amylolyticus
NCBI taxonomy Id: 490899
Other names: D. amylolyticus 1221n, Desulfurococcus amylolyticus 1221n, Desulfurococcus kamchatkensis 1221n, Proteinoruptor kamchatkensis 1221n
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.