STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DKAM_0876COG0477 Permeases of the major facilitator superfamily. (454 aa)    
Predicted Functional Partners:
DKAM_0877
Hydrolases of the alpha/beta superfamily; Pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family).
 
  
 0.866
DKAM_0878
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.660
DKAM_0637
Metallophosphoesterase; COG1409 Predicted phosphohydrolases.
 
 
 
 0.602
DKAM_0591
Radical SAM domain protein; COG0535 Predicted Fe-S oxidoreductases; pfam04055, Radical_SAM, Radical SAM superfamily.
 
    0.441
DKAM_0638
Membrane-anchored protein predicted to be involved in regulation of amylopullulanase-like protein.
  
     0.421
DKAM_0286
Pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5 Middle.
 
   
 0.407
Your Current Organism:
Desulfurococcus amylolyticus
NCBI taxonomy Id: 490899
Other names: D. amylolyticus 1221n, Desulfurococcus amylolyticus 1221n, Desulfurococcus kamchatkensis 1221n, Proteinoruptor kamchatkensis 1221n
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