Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DKAM_0553 | DKAM_0939 | Dinitrogenase iron-molybdenum cofactor biosynthesis protein; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; pfam02579, Nitro_FeMo-Co, Dinitrogenase iron-molybdenum cofactor. | DUF134 domain containing protein. | 0.523 |
DKAM_0937 | DKAM_0938 | ParB domain protein nuclease. | Putative uncharacterized protein. | 0.773 |
DKAM_0937 | DKAM_0939 | ParB domain protein nuclease. | DUF134 domain containing protein. | 0.508 |
DKAM_0938 | DKAM_0937 | Putative uncharacterized protein. | ParB domain protein nuclease. | 0.773 |
DKAM_0938 | DKAM_0939 | Putative uncharacterized protein. | DUF134 domain containing protein. | 0.508 |
DKAM_0939 | DKAM_0553 | DUF134 domain containing protein. | Dinitrogenase iron-molybdenum cofactor biosynthesis protein; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; pfam02579, Nitro_FeMo-Co, Dinitrogenase iron-molybdenum cofactor. | 0.523 |
DKAM_0939 | DKAM_0937 | DUF134 domain containing protein. | ParB domain protein nuclease. | 0.508 |
DKAM_0939 | DKAM_0938 | DUF134 domain containing protein. | Putative uncharacterized protein. | 0.508 |
DKAM_0939 | DKAM_0940 | DUF134 domain containing protein. | Hypothetical protein. | 0.492 |
DKAM_0939 | DKAM_0941 | DUF134 domain containing protein. | Hypothetical protein. | 0.488 |
DKAM_0940 | DKAM_0939 | Hypothetical protein. | DUF134 domain containing protein. | 0.492 |
DKAM_0940 | DKAM_0941 | Hypothetical protein. | Hypothetical protein. | 0.741 |
DKAM_0941 | DKAM_0939 | Hypothetical protein. | DUF134 domain containing protein. | 0.488 |
DKAM_0941 | DKAM_0940 | Hypothetical protein. | Hypothetical protein. | 0.741 |