Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DKAM_1027Serine/threonine protein phosphatase. (311 aa)    
Predicted Functional Partners:
DKAM_0542
Pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein; COG1100 GTPase SAR1 and related small G proteins.
  
 0.906
DKAM_0278
Protein of unknown function, ATP binding; K06883; COG1100 GTPase SAR1 and related small G proteins.
  
 0.900
DKAM_0913
Protein kinase.
   
 0.875
DKAM_0020
TATA binding protein (TBP)-interacting protein (TIP49-like).
  
 
 0.871
DKAM_0106
Exonuclease of the beta-lactamase fold involved in RNA processing-like protein.
   
 0.848
DKAM_1316
COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
  
 0.848
rpl3
50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
 
 0.832
DKAM_0145
Putative GTPase or GTP-binding protein.
  
  
 0.804
rpl14e
50S ribosomal protein L14e; Belongs to the eukaryotic ribosomal protein eL14 family.
    
 0.799
DKAM_0983
Histone deacetylase superfamily.
 
 
 0.770
Your Current Organism:
Desulfurococcus amylolyticus
NCBI taxonomy Id: 490899
Other names: D. amylolyticus 1221n, Desulfurococcus amylolyticus 1221n, Desulfurococcus kamchatkensis 1221n, Proteinoruptor kamchatkensis 1221n
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