STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5L36_0A02770Uncharacterized protein; Belongs to the DEAD box helicase family. (439 aa)    
Predicted Functional Partners:
C5L36_0B06600
Uncharacterized protein.
   
 0.999
C5L36_0C02160
Uncharacterized protein.
   
 
 0.991
C5L36_0A08340
Uncharacterized protein.
   
 0.990
BOH78_4467
U3 small nucleolar RNA-associated protein 7.
   
 0.990
BOH78_4543
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.989
BOH78_3746
ATP-dependent RNA helicase CHR1.
  
0.989
C5L36_0E05400
Uncharacterized protein.
   
 0.989
BOH78_4846
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.987
BOH78_0970
ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.
  
 
0.986
BOH78_2750
Pre-rRNA-processing protein ESF2.
   
 
 0.986
Your Current Organism:
Pichia kudriavzevii
NCBI taxonomy Id: 4909
Other names: AJ 4457 [[Candida krusei]], ATCC 24210, ATCC 6258 [[Candida krusei]], ATCC 749 [[Candida krusei]], CBS 5147, CBS 5147 T, CBS 573 [[Candida krusei]], Candida acidothermophilum, Candida krusei, DBVPG 7230 [[Candida krusei]], IAM 12186 [[Candida krusei]], Issatchenkia orientalis, NRRL Y-413 [[Candida krusei]], NRRL Y-5396, NRRL Y-7179 [[Candida krusei]], P. kudriavzevii, Saccharomyces krusei, Saccharomyces sp. p1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.