STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP89198.1Ribosomal protein S6--L-glutamate ligase. (276 aa)    
Predicted Functional Partners:
SIQ88154.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.730
rimK
SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
 
   
 0.575
pepA
Aminopeptidase A. Metallo peptidase. MEROPS family M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
 
 0.533
SIQ23122.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
    
 0.530
SIQ23145.1
Glutathione S-transferase.
    
 0.530
SIP89220.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.521
gshA
Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
 
 0.504
SIQ83445.1
Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03.
    
 0.492
SIQ96974.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
    
 0.491
SIQ09227.1
NADPH-glutathione reductase; Maintains high levels of reduced glutathione.
     
 0.486
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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