STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP92172.1Pilus assembly protein CpaC; Belongs to the bacterial secretin family. (538 aa)    
Predicted Functional Partners:
SIP92188.1
Pilus assembly protein CpaB.
 
  
 0.986
SIP92061.1
Pilus assembly protein CpaF.
  
 0.969
SIP92076.1
Pilus assembly protein CpaE.
 
  
 0.967
SIP92034.1
Tight adherence protein C.
 
  
 0.959
SIP92046.1
Tight adherence protein B.
 
  
 0.956
SIP92219.1
Prepilin peptidase CpaA.
 
  
 0.949
SIP92134.1
Flp pilus assembly protein TadG.
 
  
 0.926
SIP92207.1
Hypothetical protein.
 
     0.904
SIP92017.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
     0.842
SIP92240.1
Pilus assembly protein Flp/PilA.
  
  
 0.777
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.