STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP87427.1HD domain-containing protein. (97 aa)    
Predicted Functional Partners:
SIP87413.1
GAF domain-containing protein.
    0.994
SIQ15821.1
PAS domain S-box-containing protein.
    
 0.822
SIQ21771.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.806
SIQ67835.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.804
SIQ87767.1
Adenylate cyclase.
 
  
  0.791
SIQ16502.1
Polar amino acid transport system substrate-binding protein.
 
 
 0.704
SIQ37550.1
Signal transduction histidine kinase.
    
 0.701
SIP92636.1
Diguanylate cyclase with GAF sensor.
 
 
 0.699
SIQ59379.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.678
SIQ66293.1
periplasmic/7TM domain sensor diguanylate cyclase.
 
 
 0.672
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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