STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP93016.1General secretion pathway protein H. (154 aa)    
Predicted Functional Partners:
SIP92976.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.968
SIP92999.1
General secretion pathway protein I.
 
  
 0.961
SIP92932.1
General secretion pathway protein L.
 
   
 0.954
SIP92954.1
General secretion pathway protein K.
 
     0.952
SIP92915.1
Type II secretion system (T2SS), protein M subtype b.
 
     0.951
SIP92880.1
Type II secretion system protein D (GspD).
 
   
 0.949
SIP93032.1
General secretion pathway protein G.
 
  
 0.938
SIP93051.1
Type II secretion system protein F (GspF).
 
   
 0.834
SIQ39000.1
Type IV pilus assembly protein PilW.
 
  
 0.833
SIP93068.1
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.825
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.