STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP99601.1Outer membrane protein, adhesin transport system. (448 aa)    
Predicted Functional Partners:
SIP99629.1
Membrane fusion protein, adhesin transport system.
 
 0.980
SIP99649.1
ATP-binding cassette, subfamily C, LapB.
 
 0.970
SIQ27248.1
Membrane fusion protein, adhesin transport system.
 
 0.933
SIQ27262.1
ATP-binding cassette, subfamily C, LapB.
 
 0.901
SIQ58655.1
HlyD family secretion protein.
  
 0.883
SIQ87377.1
Membrane fusion protein, epimerase transport system.
 
 0.877
SIP99663.1
Hypothetical protein.
 
     0.838
SIQ08771.1
Predicted transglutaminase-like cysteine proteinase.
 
   
 0.792
SIQ67850.1
Transglutaminase-like cysteine proteinase BTLCP.
 
   
 0.791
SIP99617.1
Regulatory protein, luxR family.
 
     0.776
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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