STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ16304.1Transcriptional regulator, DeoR family. (251 aa)    
Predicted Functional Partners:
SIQ16290.1
iron(III) transport system substrate-binding protein.
       0.618
SIQ16238.1
Metallo-beta-lactamase superfamily protein.
       0.612
SIQ16254.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
       0.612
SIQ16275.1
iron(III) transport system permease protein.
       0.612
SIQ16203.1
Hypothetical protein.
       0.597
SIQ09356.1
Acetyltransferase.
    
   0.542
SIQ01324.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.524
SIQ16219.1
Probable phosphoglycerate mutase.
       0.522
SIP93919.1
Transcriptional regulator, LacI family.
  
   
 0.446
SIQ67944.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
    0.443
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.