STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ39000.1Type IV pilus assembly protein PilW. (345 aa)    
Predicted Functional Partners:
SIQ39019.1
Type IV pilus assembly protein PilV.
 
  
 0.993
SIQ38968.1
Type IV pilus assembly protein PilY1.
 
  
 0.992
SIQ38978.1
Type IV pilus assembly protein PilX.
 
  
 0.992
SIQ38936.1
Type IV pilus assembly protein PilE.
 
  
 0.979
SIQ39032.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.967
SIQ80627.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.875
SIQ88273.1
Type IV pilus assembly protein PilP.
  
  
 0.848
SIQ88318.1
Type IV pilus assembly protein PilN.
 
   
 0.835
SIP93016.1
General secretion pathway protein H.
 
  
 0.833
SIQ88292.1
Type IV pilus assembly protein PilO.
 
   
 0.812
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.