STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ39165.1Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. (478 aa)    
Predicted Functional Partners:
SIQ39187.1
Uncharacterized conserved protein YbgA, DUF1722 family.
  
  
 0.955
SIQ39194.1
anti-ECFsigma factor, ChrR.
     
 0.796
SIQ39216.1
RNA polymerase sigma-70 factor, ECF subfamily.
     
 0.780
SIQ39238.1
Predicted NAD/FAD-binding protein.
 
   
 0.751
SIQ39247.1
Hypothetical protein.
 
     0.712
SIQ39265.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.688
SIQ39306.1
Protein of unknown function.
 
  
 0.622
SIQ82839.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.612
SIQ28188.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
   0.589
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.582
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.