STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ40255.1Tripartite ATP-independent transporter solute receptor, DctP family. (328 aa)    
Predicted Functional Partners:
SIQ40239.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.918
SIQ40212.1
TRAP transporter, DctM subunit.
 
    0.914
SIQ75902.1
TRAP transporter, DctM subunit.
 
    0.789
SIQ85898.1
TRAP transporter, DctM subunit.
 
    0.788
SIQ07341.1
TRAP transporter, DctM subunit.
 
    0.787
SIQ80562.1
TRAP transporter, DctM subunit.
 
    0.783
SIQ88912.1
TRAP transporter, DctM subunit.
  
    0.770
SIQ52064.1
TRAP transporter, DctM subunit.
 
    0.760
SIQ83043.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.743
SIQ49863.1
TRAP transporter, DctM subunit.
  
    0.728
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.