STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ76055.1TRAP transporter, DctM subunit. (424 aa)    
Predicted Functional Partners:
SIQ76108.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.936
SIQ76077.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.868
SIQ59452.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.800
SIQ75936.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.739
SIQ61619.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.715
SIQ39613.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.706
SIQ88867.1
C4-dicarboxylate-binding protein DctP.
  
    0.673
SIQ39600.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.672
SIQ36215.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.663
SIP93152.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.662
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.