Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIQ76439.1 | SIQ76466.1 | SAMN05421647_108215 | SAMN05421647_108216 | Amidase. | Outer membrane porin, OprD family. | 0.746 |
SIQ76439.1 | SIQ76486.1 | SAMN05421647_108215 | SAMN05421647_108217 | Amidase. | DNA-binding transcriptional regulator, IclR family. | 0.471 |
SIQ76439.1 | tatA | SAMN05421647_108215 | SAMN05421647_108214 | Amidase. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.611 |
SIQ76466.1 | SIQ76439.1 | SAMN05421647_108216 | SAMN05421647_108215 | Outer membrane porin, OprD family. | Amidase. | 0.746 |
SIQ76466.1 | SIQ76486.1 | SAMN05421647_108216 | SAMN05421647_108217 | Outer membrane porin, OprD family. | DNA-binding transcriptional regulator, IclR family. | 0.485 |
SIQ76466.1 | tatA | SAMN05421647_108216 | SAMN05421647_108214 | Outer membrane porin, OprD family. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.581 |
SIQ76486.1 | SIQ76439.1 | SAMN05421647_108217 | SAMN05421647_108215 | DNA-binding transcriptional regulator, IclR family. | Amidase. | 0.471 |
SIQ76486.1 | SIQ76466.1 | SAMN05421647_108217 | SAMN05421647_108216 | DNA-binding transcriptional regulator, IclR family. | Outer membrane porin, OprD family. | 0.485 |
tatA | SIQ76439.1 | SAMN05421647_108214 | SAMN05421647_108215 | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Amidase. | 0.611 |
tatA | SIQ76466.1 | SAMN05421647_108214 | SAMN05421647_108216 | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Outer membrane porin, OprD family. | 0.581 |