STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ96929.1alpha-L-glutamate ligase-related protein. (334 aa)    
Predicted Functional Partners:
SIQ96907.1
Inactive transglutaminase fused to 7 transmembrane helices.
  
 0.974
SIQ96883.1
Uncharacterized conserved protein.
 
     0.956
SIQ11939.1
Conserved hypothetical protein.
    
 0.768
SIQ88154.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.730
SIQ23122.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
    
 0.530
SIQ23145.1
Glutathione S-transferase.
    
 0.530
SIQ35822.1
Methyltransferase domain-containing protein.
  
     0.507
SIQ73220.1
Uncharacterized iron-regulated protein.
  
  
  0.416
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.