STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ95862.1Type VI secretion system protein ImpF. (158 aa)    
Predicted Functional Partners:
SIQ95815.1
Type VI secretion system protein ImpH.
 
  
 0.982
SIQ95841.1
Type VI secretion system protein ImpG.
 
  
 0.981
SIQ95880.1
Protein of avirulence locus involved in temperature-dependent protein secretion.
 
    0.975
SIQ95912.1
Type VI secretion system protein ImpD.
 
  
 0.971
SIQ95953.1
Type VI secretion system protein ImpB.
 
  
 0.971
SIQ96072.1
Type VI secretion system protein ImpK.
 
  
 0.970
SIQ95936.1
Type VI secretion system protein ImpC.
 
  
 0.947
SIQ95971.1
Type VI secretion system protein ImpA.
 
  
 0.943
SIQ96093.1
Type VI secretion system protein ImpJ.
 
  
 0.929
SIQ95771.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
  
 0.923
Your Current Organism:
Marinobacterium stanieri
NCBI taxonomy Id: 49186
Other names: ATCC 27130, CCUG 16021, CIP 106697, DSM 7027, LMG 6847, LMG:6847, M. stanieri, Pseudomonas stanieri, strain 146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.